Package: EpiForsk 0.2.2

Kim Daniel Jakobsen

EpiForsk: Code Sharing at the Department of Epidemiology Research at Statens Serum Institut

This is a collection of assorted functions and examples collected from various projects. Currently we have functionalities for simplifying overlapping time intervals, Charlson comorbidity score constructors for Danish data, getting frequency for multiple variables, getting standardized output from logistic and log-linear regressions, sibling design linear regression functionalities a method for calculating the confidence intervals for functions of parameters from a GLM, Bayes equivalent for hypothesis testing with asymptotic Bayes factor, and several help functions for generalized random forest analysis using 'grf'.

Authors:Anders Husby [aut], Anna Laksafoss [aut], Emilia Myrup Thiesson [aut], Kim Daniel Jakobsen [aut, cre], Mikael Andersson [aut], Klaus Rostgaard [aut]

EpiForsk_0.2.2.tar.gz
EpiForsk_0.2.2.zip(r-4.7)EpiForsk_0.2.2.zip(r-4.6)EpiForsk_0.2.2.zip(r-4.5)
EpiForsk_0.2.2.tgz(r-4.6-any)EpiForsk_0.2.2.tgz(r-4.5-any)
EpiForsk_0.2.2.tar.gz(r-4.7-any)EpiForsk_0.2.2.tar.gz(r-4.6-any)
EpiForsk_0.2.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
EpiForsk/json (API)

# Install 'EpiForsk' in R:
install.packages('EpiForsk', repos = c('https://laksafoss.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/laksafoss/epiforsk/issues

Datasets:

On CRAN:

Conda:

epidemiology

5.16 score 12 scripts 556 downloads 28 exports 92 dependencies

Last updated from:57d5ba26b1. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK204
source / vignettesOK249
linux-release-x86_64OK173
macos-release-arm64OK134
macos-oldrel-arm64OK116
windows-develOK175
windows-releaseOK114
windows-oldrelOK174
wasm-releaseOK149

Exports:.datatable.awareasympBFbraid_rowsCATESurfaceCausalForestDynamicSubgroupsCForBenefitcharlson_scoreCovariateBalanceDiscreteCovariatesToOneHotfct_confintflatten_date_intervalsFlattenDatesDTfreq_functionfreq_function_repeatedinvasympBFinvlogasympBFinvwatershedListPermutelmslogasympBFmany_mergemulti_joinodds_ratio_functionodds_ratio_function_repeatedRATEOmnibusTestRATETesttry_catch_warningswatershed

Dependencies:backportsbase64encBHbroombslibcachemcheckmatechkcliclustercolorspacecowplotcpp11data.tableDBIDiceKrigingdigestdplyrevaluatefarverfastmapfontawesomeforcatsforeignFormulafsgenericsggplot2gluegrfgridExtragtablehighrHmischtmlTablehtmltoolshtmlwidgetsisobandjquerylibjsonliteknitrlabelinglatticelifecyclelmtestmagrittrMatchItMatrixmemoisemimeminqamitoolsnnetnumDerivpatchworkpillarpkgconfigpolicytreeprogressrpurrrR6rappdirsRColorBrewerRcppRcppArmadilloRcppEigenRcppProgressrlangrmarkdownrpartrstudioapiS7sandwichsassscalesstringistringrsurveysurvivalsvyVGAMtibbletidyrtidyselecttinytexutf8vctrsVGAMviridisLitewithrxfunyamlzoo

Husby's Multi Faceted Forest Plot
Example 1: Plain text
Rendered fromandh_forest_plot.Rmdusingknitr::rmarkdown

Last update: 2024-02-26
Started: 2022-11-07

Writing Package Functions
Setting up | Dependencies | Loading package functions
Rendered fromWriting_functions.Rmdusingknitr::rmarkdown

Last update: 2023-02-03
Started: 2022-12-05

Contributing to EpiForsk
Overview | Managing Git Credentials | Clone the EpiForsk repository | Contribution workflow | Additional
Rendered fromContributing.Rmdusingknitr::rmarkdown

Last update: 2023-01-17
Started: 2022-12-05

Readme and manuals

Help Manual

Help pageTopics
EpiForskEpiForsk-package EpiForsk
make package data table aware.datatable.aware
Simulated Time-Varying Residence Dataadls_timevarying_region_data
Example Data for Husby's Forest Plot Vignetteandh_forest_data
Bind lists of list of multiple data frames by rowbraid_rows
Calculate CATE on a surface in the covariate spaceCATESurface
Calculate CATE in dynamically determined subgroupsCausalForestDynamicSubgroups
Round numbers up to a given number of decimal placesceiling_dec
c-for-benefitCForBenefit
Charlson Score Constructorcharlson_score
solve optimization problem for CI boundsci_fct
Handle errors returned by ci_fctci_fct_error_handler
Plots for checking covariate balance in causal forestCovariateBalance
Determine number of decimal placesdecimalplaces
Extract discrete covariate namesDiscreteCovariateNames
One-hot encode factorsDiscreteCovariatesToOneHot
Confidence set for functions of model parametersfct_confint fct_confint.default fct_confint.glm fct_confint.lm fct_confint.lms
Flatten Date Intervalsflatten_date_intervals
Flatten Date IntervalsFlattenDatesDT
Round numbers down to a given number of decimal placesfloor_dec
Frequency Tables with Percentage and Odds Ratiosfreq_function
Wrapper for 'freq_function()' to get frequencies for many variables in one go.freq_function_repeated
Permute the levels of a nested listListPermute
Wrapper around lm for sibling designlms print.lms
Asymptotic Bayes factorsasympBF invasympBF invlogasympBF invwatershed logasympBF watershed
Merging Many Data Frames with Name Handlingmany_merge
Join many data frames with name handlingmulti_join
Easier to perform logistic and log-linear regressions giving a standardized output tableodds_ratio_function
Wrapper for the 'odds_ratio_function()'to perform several similar analyses in one goodds_ratio_function_repeated
RATE based omnibus test of heterogeneityRATEOmnibusTest RATEOmnibusTest.causal_forest RATEOmnibusTest.causal_survival_forest
wrapper for rank_average_treatment_effectRATETest
Summary function for svy_vglm objectssummary.svy_vglm
Try Catch with Warning Handlingtry_catch_warnings
Heteroscedasticity-Consistent Covariance MatrixvcovHC