Package: tame 0.2.1

tame: Timing, Anatomical, Therapeutic and Chemical Based Medication Clustering

Agglomerative hierarchical clustering with a bespoke distance measure based on medication similarities in the Anatomical Therapeutic Chemical Classification System, medication timing and medication amount or dosage. Tools for summarizing, illustrating and manipulating the cluster objects are also available.

Authors:Anna Laksafoss [aut, cre]

tame_0.2.1.tar.gz
tame_0.2.1.zip(r-4.7)tame_0.2.1.zip(r-4.6)tame_0.2.1.zip(r-4.5)
tame_0.2.1.tgz(r-4.6-x86_64)tame_0.2.1.tgz(r-4.6-arm64)tame_0.2.1.tgz(r-4.5-x86_64)tame_0.2.1.tgz(r-4.5-arm64)
tame_0.2.1.tar.gz(r-4.7-arm64)tame_0.2.1.tar.gz(r-4.7-x86_64)tame_0.2.1.tar.gz(r-4.6-arm64)tame_0.2.1.tar.gz(r-4.6-x86_64)
tame_0.2.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
tame/json (API)

# Install 'tame' in R:

install.packages('tame', repos = c('https://laksafoss.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/laksafoss/tame/issues

Uses libs:

c++– GNU Standard C++ Library v3

Datasets:

complications - A Simulated Data Set About Pregnancy Complications
eczema - A Simulated Data Set About Eczema

On CRAN:

cpp

3.00 score 1 stars 4 scripts 539 downloads 19 exports 34 dependencies

Last updated from:b5b08dce46. Checks:13 OK. Indexed: yes.

Target	Result	Time
linux-devel-arm64	OK	145
linux-devel-x86_64	OK	147
source / vignettes	OK	207
linux-release-arm64	OK	140
linux-release-x86_64	OK	131
macos-release-arm64	OK	168
macos-release-x86_64	OK	229
macos-oldrel-arm64	OK	257
macos-oldrel-x86_64	OK	271
windows-devel	OK	143
windows-release	OK	173
windows-oldrel	OK	174
wasm-release	OK	115

Exports:cluster_frequency comedication_count default_atc_groups employ enrich is.medic medic medication_frequency parameters_constructor plot_cluster_frequency plot_comedication_count plot_medication_frequency plot_summary plot_timing_atc_group plot_timing_trajectory refactor summary_crop timing_atc_group timing_trajectory

Dependencies:cli cpp11 dplyr farver generics ggplot2 glue gtable isoband labeling lifecycle magrittr pillar pkgconfig purrr R6 RColorBrewer Rcpp RcppArmadillo RcppParallel Rfast rlang S7 scales stringi stringr tibble tidyr tidyselect utf8 vctrs viridisLite withr zigg

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
The Frequency of Assignment to Each Cluster	cluster_frequency
Frequency tables for medication amount	comedication_count
A Simulated Data Set About Pregnancy Complications	complications
Default ATC groups for summaries	default_atc_groups
A Simulated Data Set About Eczema	eczema
Employ a Clustering to New Data	employ
Enrich Clustering Parameter	enrich
Test if an object is a medic-object	is.medic
Medication clustering (based on ATC and timing)	medic print.medic
ATC Code Frequency Within Clusters	medication_frequency
Internal option constructor	parameters_constructor
Plot Cluster Frequency	plot_cluster_frequency plot_cluster_frequency.cluster_frequency plot_cluster_frequency.medic plot_cluster_frequency.summary.medic
Plot Comedication Count	plot_comedication_count plot_comedication_count.comedication_count plot_comedication_count.medic plot_comedication_count.summary.medic
Plot Medication Frequency	plot_medication_frequency plot_medication_frequency.medic plot_medication_frequency.medication_frequency plot_medication_frequency.summary.medic
Plot Summary	plot_summary plot_summary.medic plot_summary.summary.medic
Plot Timing ATC Group	plot_timing_atc_group plot_timing_atc_group.medic plot_timing_atc_group.summary.medic plot_timing_atc_group.timing_atc_group
Plot Timing Trajectory	plot_timing_trajectory plot_timing_trajectory.medic plot_timing_trajectory.summary.medic plot_timing_trajectory.timing_trajectory
Print Summary of Medication	print.summary.medic
Refactor Cluster Levels	refactor
Quickfix regex many-to-many inner join	regex_inner_join
Summary of a medic-object using str function	str.summary.medic
Crop Clustering Summary	summary_crop summary_crop.cluster_frequency summary_crop.comedication_count summary_crop.medication_frequency summary_crop.summary.medic summary_crop.timing_atc_group summary_crop.timing_trajectory
Summary of medic object	summary.medic
Timing and ATC pattern interactions	timing_atc_group
Timing pattern frequency within clusters	timing_trajectory